Department Publications through September 1, 2019

Active surveillance for intermediate-risk prostate cancer: yes, but for whom?

Overland MR, Washington SL 3rd, Carroll PR, Cooperberg MR, Herlemann A.

Curr Opin Urol. 2019 Aug 20.

https://www.ncbi.nlm.nih.gov/pubmed/31436567

 

Acupressure to Reduce Treatment-Related Symptoms for Children With Cancer and Recipients of Hematopoietic Stem Cell Transplant: Protocol for a Randomized Controlled Trial.

Lown EA, Banerjee A, Vittinghoff E, Dvorak CC, Hartogensis W, Melton A, Mangurian C, Hu H, Shear D, Adcock R, Morgan M, Golden C, Hecht FM.

Glob Adv Health Med. 2019 Aug

https://www.ncbi.nlm.nih.gov/pubmed/31453017

 

The "All of Us" Research Program.

All of Us Research Program Investigators, Denny JC, Rutter JL, Goldstein DB, Philippakis A, Smoller JW, Jenkins G, Dishman E.

N Engl J Med. 2019

https://www.nejm.org/doi/full/10.1056/NEJMsr1809937?url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org&rfr_dat=cr_pub%3Dpubmed

 

AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design.

Keough KC, Lyalina S, Olvera MP, Whalen S, Conklin BR, Pollard KS.

Genome Biol. 2019 Aug

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6694686/

 

Association of Medicaid Expansion and Health Insurance with Receipt of Smoking Cessation Services and Smoking Behaviors in Substance Use Disorder Treatment.

Yip D, Gubner N, Le T, Williams D, Delucchi K, Guydish J.

J Behav Health Serv Res. 2019 Jul 29.

https://www.ncbi.nlm.nih.gov/pubmed/31359228

 

Association of imputed prostate cancer transcriptome with disease risk reveals novel mechanisms.

Emami NC, Kachuri L, Meyers TJ, Das R, Hoffman JD, Hoffmann TJ, Hu D, Shan J, Feng FY, Ziv E, Van Den Eeden SK, Witte JS.

Nat Commun. 2019 Jul

https://www.nature.com/articles/s41467-019-10808-7

 

Big Data in Cancer Research: Real-World Resources for Precision Oncology to Improve Cancer Care Delivery.

Tsai CJ, Riaz N, Gomez SL.

Semin Radiat Oncol. 2019 Oct

https://www.ncbi.nlm.nih.gov/pubmed/31472730

 

C1q/TNF-Related Proteins, HIV and HIV-associated Factors, and Cardiometabolic Phenotypes in Middle-Aged Women.

Kasher Meron M , Xu S, Glesby M, Qi Q, Hanna DB, Anastos K, Kaplan R, Kizer J.

AIDS Res Hum Retroviruses. 2019 Jul 30.

https://www.ncbi.nlm.nih.gov/pubmed/31359766

 

Cardiac function assessed by myocardial deformation in adult polycystic kidney disease patients.

Lassen MCH, Qasim AN, Biering-Sørensen T, Reeh JLT, Watnick T, Seliger SL, Chen H, Sawan MA, Nguyen D, Li Y, Hong SN, Park M.

BMC Nephrol. 2019 Aug 16

https://www.ncbi.nlm.nih.gov/pubmed/31419965

 

Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming.

Stone NR, Gifford CA, Thomas R, Pratt KJB, Samse-Knapp K, Mohamed TMA, Radzinsky EM, Schricker A, Ye L, Yu P, van Bemmel JG, Ivey KN, Pollard KS, Srivastava D.

Cell Stem Cell. 2019 Jul

https://www.ncbi.nlm.nih.gov/pubmed/31271750

 

DNA-Dependent Protein Kinase Drives Prostate Cancer Progression through Transcriptional Regulation of the Wnt Signaling Pathway.

Kothari V, Goodwin JF, Zhao SG, Drake JM, Yin Y, Chang SL, Evans JR, Wilder-Romans K, Gabbara K, Dylgjeri E, Chou J, Sun G, Tomlins SA, Mehra R, Hege K, Filvaroff EH, Schaeffer E, Karnes RJ, Quigley DA, Rathkopf DE, He HH, Speers C, Spratt DE, Gilbert LA, Ashworth A, Chinnaiyan AM, Raj GV, Knudsen KE, Feng FY.

Clin Cancer Res. 2019 Jul 2.

https://www.ncbi.nlm.nih.gov/pubmed/31266829

 

Decipher identifies men with otherwise clinically favorable-intermediate risk disease who may not be good candidates for active surveillance.

Herlemann A, Huang HC, Alam R, Tosoian JJ, Kim HL, Klein EA, Simko JP, Chan JM, Lane BR, Davis JW, Davicioni E, Feng FY, McCue P, Kim H, Den RB, Bismar TA, Carroll PR, Cooperberg MR.

Prostate Cancer Prostatic Dis. 2019 Aug 27.

https://www.ncbi.nlm.nih.gov/pubmed/31455846

 

Diabetes Mellitus in Children with Acute Recurrent and Chronic Pancreatitis: Data from the INSPPIRE Cohort.

Bellin MD, Lowe M, Zimmerman MB, Wilschanski M, Werlin S, Troendle DM, Shah U, Schwarzenberg SJ, Pohl JF, Perito E, Ooi CY, Nathan JD, Morinville VD, McFerron BA, Mascarenhas MR, Maqbool A, Liu Q, Lin TK, Husain SZ, Himes R, Heyman MB, Gonska T, Giefer MJ, Gariepy CE, Freedman SD, Fishman DS, Barth B, Abu-El-Haija M, Uc A.

J Pediatr Gastroenterol Nutr. 2019 Aug 27.

https://www.ncbi.nlm.nih.gov/pubmed/31460885

 

Dual Unsafe Injection and Sexual Behaviors for HIV Infection Among People Who Inject Drugs in Iran.

Esmaeili A, Shokoohi M, Danesh A, Sharifi H, Karamouzian M, Haghdoost A, Shahesmaeili A, Akbarpour S, Morris MD, Mirzazadeh A.

AIDS Behav. 2019 Jun

https://www.ncbi.nlm.nih.gov/pubmed/30460664

 

Effect of cost exposure on medical students' preferred mammography screening strategies: A randomized comparison.

Nguyen C, Sawaya GF, Hoffman A.

Med Teach. 2019 Jul

https://www.ncbi.nlm.nih.gov/pubmed/31339438

 

Elevated faecal 12,13-diHOME concentration in neonates at high risk for asthma is produced by gut bacteria and impedes immune tolerance.

Levan SR, Stamnes KA, Lin DL, Panzer AR, Fukui E, McCauley K, Fujimura KE, McKean M, Ownby DR, Zoratti EM, Boushey HA, Cabana MD, Johnson CC, Lynch SV.

Nat Microbiol. 2019 Jul 22.

https://www.ncbi.nlm.nih.gov/pubmed/31332384

 

Genetic ancestry does not explain increased atopic dermatitis susceptibility or worse disease control among African Americans in two large US cohorts.

Abuabara K, You Y, Margolis DJ, Hoffmann TJ, Risch N, Jorgenson E.

J Allergy Clin Immunol. 2019 Jul 29.

https://www.ncbi.nlm.nih.gov/pubmed/31369801

 

Genetic and molecular epidemiology of adult diffuse glioma.

Molinaro AM, Taylor JW, Wiencke JK, Wrensch MR.

Nat Rev Neurol. 2019 Jul

https://www.ncbi.nlm.nih.gov/pubmed/31227792

 

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards.

Lind AL, Lai YYY, Mostovoy Y, Holloway AK, Iannucci A, Mak ACY, Fondi M, Orlandini V, Eckalbar WL, Milan M, Rovatsos M, Kichigin IG, Makunin AI, Johnson Pokorná M, Altmanová M, Trifonov VA, Schijlen E, Kratochvíl L, Fani R, Velenský P, Rehák I, Patarnello T, Jessop TS, Hicks JW, Ryder OA, Mendelson JR 3rd, Ciofi C, Kwok PY, Pollard KS, Bruneau BG.

Nat Ecol Evol. 2019 Aug.

https://www.ncbi.nlm.nih.gov/pubmed/31358948

 

Gut microbiome alteration in MORDOR I: a community-randomized trial of mass azithromycin distribution.

Doan T, Hinterwirth A, Worden L, Arzika AM, Maliki R, Abdou A, Kane S, Zhong L, Cummings SL, Sakar S, Chen C, Cook C, Lebas E, Chow ED, Nachamkin I, Porco TC, Keenan JD, Lietman TM.

Nat Med. 2019 Aug 12.

https://www.ncbi.nlm.nih.gov/pubmed/31406349

 

Housing First: Unsuppressed Viral Load Among Women Living with HIV in San Francisco.

Riley ED, Vittinghoff E, Koss CA, Christopoulos KA, Clemenzi-Allen A, Dilworth SE, Carrico AW.

AIDS Behav. 2019 Jul 19.

https://www.ncbi.nlm.nih.gov/pubmed/31324996

 

Impact of AKI on Urinary Protein Excretion: Analysis of Two Prospective Cohorts.

Hsu CY, Hsu RK, Liu KD, Yang J, Anderson A, Chen J, Chinchilli VM, Feldman HI, Garg AX, Hamm L, Himmelfarb J, Kaufman JS, Kusek JW, Parikh CR, Ricardo AC, Rosas SE, Saab G, Sha D, Siew ED, Sondheimer J, Taliercio JJ, Yang W, Go AS; Chronic Renal Insufficiency Cohort (CRIC) Study Investigators and the Assessment, Serial Evaluation, and Subsequent Sequelae of Acute Kidney Injury (ASSESS-AKI) Study.

J Am Soc Nephrol. 2019 Jul.

https://jasn.asnjournals.org/content/30/7/1271.long

 

Integrating biomedical research and electronic health records to create knowledge-based biologically meaningful machine-readable embeddings.

Nelson CA, Butte AJ, Baranzini SE.

Nat Commun. 2019 Jul 10.

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6620318/

 

Methods for the Watch the Spot Trial: A Pragmatic Trial of More vs. Less Intensive Strategies for Active Surveillance of Small Pulmonary Nodules.

Gould MK, Smith-Bindman R, Kelly K, Altman DE, Barjaktarevic I, Creekmur B, de Bie E, Dyer DS, Mortani Barbosa EJ Jr, Mularski RA, Qi L, Vaszar LT, Yu S, Miglioretti DL; Watch the Spot Trial Investigators.

Ann Am Thorac Soc. 2019 Jul 17.

https://www.ncbi.nlm.nih.gov/pubmed/31314549

 

A mixed methods study of provider perspectives on My Birth Control: a contraceptive decision support tool designed to facilitate shared decision making.

Dehlendorf C, Reed R, Fitzpatrick J, Kuppermann M, Steinauer J, Kimport K.

Contraception. 2019 Aug 9.

https://www.ncbi.nlm.nih.gov/pubmed/31404538

 

Neuron-derived Plasma Exosome Proteins after Remote Traumatic Brain Injury.

Goetzl EJ, Peltz CB, Mustapic M, Kapogiannis D, Yaffe KC.

J Neurotrauma. 2019 Aug 23.

https://www.liebertpub.com/doi/10.1089/neu.2019.6711

 

Obesity at diagnosis and prostate cancer prognosis and recurrence risk following primary treatment by radical prostatectomy.

Langlais CS, Cowan JE, Neuhaus J, Kenfield SA, Van Blarigan EL, Broering JM, Cooperberg MR, Carroll P, Chan JM.

Cancer Epidemiol Biomarkers Prev. 2019 Aug 28.

https://www.ncbi.nlm.nih.gov/pubmed/31462398

 

Objective napping, cognitive decline, and risk of cognitive impairment in older men.

Leng Y, Redline S, Stone KL, Ancoli-Israel S, Yaffe K.

Alzheimers Dement. 2019 Aug.

https://www.ncbi.nlm.nih.gov/pubmed/31227429

 

Oculoplastic surgical services in Nigeria: status and challenges.

Idowu OO, Oldenburg CE, Vagefi MR.

Int Ophthalmol. 2019 Aug 22.

https://www.ncbi.nlm.nih.gov/pubmed/31440936

 

Projections of epidemic transmission and estimation of vaccination impact during an ongoing Ebola virus disease outbreak in Northeastern Democratic Republic of Congo, as of Feb. 25, 2019.

Worden L, Wannier R, Hoff NA, Musene K, Selo B, Mossoko M, Okitolonda-Wemakoy E, Muyembe Tamfum JJ, Rutherford GW, Lietman TM, Rimoin AW, Porco TC, Kelly JD.

PLoS Negl Trop Dis. 2019 Aug 5

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6695208/

 

Prostate cancer screening in low- and middle-income countries: the Mexican case.

Lajous M, Cooperberg MR, Rider J, Manzanilla-García HA, Gabilondo-Navarro FB, Rodríguez-Covarrubias FT, López-Ridaura R, Torres-Sánchez LE, Mohar A.

Salud Publica Mex. 2019 Jul-Aug

https://www.ncbi.nlm.nih.gov/pubmed/31314214

 

Real-time predictions of the 2018-2019 Ebola virus disease outbreak in the Democratic Republic of the Congo using Hawkes point process models.

Kelly JD, Park J, Harrigan RJ, Hoff NA, Lee SD, Wannier R, Selo B, Mossoko M, Njoloko B, Okitolonda-Wemakoy E, Mbala-Kingebeni P, Rutherford GW, Smith TB, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Rimoin AW, Schoenberg FP.

Epidemics. 2019 Jul 23

https://www.ncbi.nlm.nih.gov/pubmed/31395373

 

The role of three-dimensional printing in the surgical management of breast cancer.

Santiago L, Adrada BE, Caudle AS, Clemens MW, Black DM, Arribas EM.

J Surg Oncol. 2019 Aug 22.

https://www.ncbi.nlm.nih.gov/pubmed/31441070

 

Roux-en-Y gastric bypass is a safe and effective option that improves major Co-Morbidities associated with obesity in an older, veteran population.

Lyo V, Schafer AL, Stewart L.

Am J Surg. 2019 Jul 20.

https://www.ncbi.nlm.nih.gov/pubmed/31399194

 

Salvage Radiotherapy for Recurrent Prostate Cancer: Can the Prognostic Grade Group System Inform Treatment Timing?

Tay KJ, Polascik TJ, Howard LE, Salama JK, Schulman AA, Chen Z, Amling CL, Aronson WJ, Cooperberg MR, Kane CJ, Terris MK, Freedland SJ.

Clin Genitourin Cancer. 2019 May 24.

https://www.ncbi.nlm.nih.gov/pubmed/31257075

 

Serum Lipids Prior to Starting Androgen Deprivation Therapy and Risk of Castration-Resistant Prostate Cancer and Metastasis: Results from the SEARCH Database.

Dambal S, Howard LE, Allott EH, Aronson WJ, Kane CJ, Amling CL, Cooperberg MR, Terris MK, Freedland SJ.

J Urol. 2019 Aug 20

https://www.ncbi.nlm.nih.gov/pubmed/31430247

 

Setting and motivation in the decision to participate: An approach to the engagement of diverse samples in mobile research.

Passmore SR, Casper E, Olgin JE, Maguire C, Marcus GM, Pletcher MJ, Thomas SB.

Contemp Clin Trials Commun. 2019 Aug 10

https://www.ncbi.nlm.nih.gov/pubmed/31463416

 

Short-term weight gain among preschool children in rural Burkina Faso: a secondary analysis of a randomised controlled trial.

Dennis EG, Sie A, Ouermi L, Dah C, Tapsoba C, Zabre P, Bärnighausen T, O'Brien KS, Lebas E, Keenan JD, Oldenburg CE.

BMJ Open. 2019 Jul 29

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6677972/

 

Soluble CD14 and CD14 Variants, Other Inflammatory Markers, and Glucose Dysregulation in Older Adults: The Cardiovascular Health Study.

Shitole SG, Biggs ML, Reiner AP, Mukamal K, Djoussé L, Ix JH, Barzilay JI, Tracy RP, Siscovick D, Kizer JR

Diabetes Care. 2019 Aug 30

https://care.diabetesjournals.org/content/early/2019/08/28/dc19-0723.long

 

The Unaddressed Needs of Alcohol-Using Couples on Antiretroviral Therapy in Malawi: Formative Research on Multilevel Interventions.

Conroy AA, Ruark A, McKenna SA, Tan JY, Darbes LA, Hahn JA, Mkandawire J.

AIDS Behav. 2019 Aug 27

https://www.ncbi.nlm.nih.gov/pubmed/31456201